Welcome to GalaxyTrakr!

Open-source Bioinformatics for Public Health

This site is intended for use by GenomeTrakr laboratories and their collaborators to assist in the analysis of genomic data for foodborne pathogens. This instance of Galaxy is hosted in a public environment and no personally identifiable (PII) or commercial confidential information should be uploaded.

Information and Announcements:

Forgot Password? We now support self reset. Go to preferences in the top right dropdown by your username.

Need Help? Email the GalaxyTrakr Support Team

We no longer support SFTP upload. Please see this document for an alternate command line upload tool.GalaxyTrakr Upload Guide

CFSAN SNP Pipeline will be replaced by CSP2 (CFSAN SNP Pipeline 2) on this new version of GalaxyTrakr. CSP2 (CFSAN SNP Pipeline 2 ) tool can be found under Variant calling section in tool panel.

GalaxyTrakr User Guide

GalaxyTrakr FAQ Document

Vulnerability Disclosure Policy

Galaxy is an open platform for supporting data intensive research and is developed by The Galaxy Team with the support of many contributors.

The Galaxy Project is supported in part by NHGRI, NSF, The Huck Institutes of the Life Sciences, The Institute for CyberScience at Penn State, and Johns Hopkins University.